PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1486970.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 540aa    MW: 61295.4 Da    PI: 4.5531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1486970.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.14e-1111645361374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalklfsevs 88 
                      lv+ Ll+cAeav  +d+++a+ lL+r+  lasp+gd++qR+  +f+ +L+ rl+   +s ++    + + s++n      +++l a++l+++++
  Lj3g3v1486970.1 164 LVHMLLACAEAVGCRDTQQAEFLLSRIWALASPSGDSLQRVSYCFATGLKCRLLLlPQSAIA--NGTFTRSSMNvplitRENKLEAFHLLYQTT 255
                      689**************************************************993333333..3333333344578878899999******** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      P++ f++++aN+aI +a +g++ +Hi+D+++++ lQWp+L++aL sRpegpp+lRiTg+ +  ++++ +l++  + L + A++lg+p+ef+++ 
  Lj3g3v1486970.1 256 PYIAFGFMAANEAIFQASKGKSSIHIVDLGMEHTLQWPSLIRALVSRPEGPPKLRITGLIR-IEDNNPKLQTRINALLEEASSLGMPLEFHIIS 348
                      ************************************************************9.5579999***9*******************86 PP

             GRAS 183 ak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      ++ + + l++e+L+++ gEal Vn +lqlh+  +e+    +   e+L+ +k+l P+ ++vveq+++hn++ Fl rfle+l+yysa+fdslea++
  Lj3g3v1486970.1 349 EDlTPSLLTVEKLNLRDGEALFVNGILQLHKHIKENRGYLK---EILQSIKKLGPTAITVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASM 439
                      66788999************************977766666...9************************************************* PP

             GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                      pr+s++r k+Er  +++ei n++a ega+r erhe++ +Wr++l++aGF+ +pl+   ++qa+++l+ ++ dgy++ +e+g+l+lgWk++p++ 
  Lj3g3v1486970.1 440 PRNSQQRGKIERLHFAEEILNIIAYEGADRMERHERVDQWRRQLGRAGFQVMPLK--CTSQARMMLSVYDCDGYTLSCEKGCLLLGWKGKPVMK 531
                      ******************************************************7..679********************************** PP

             GRAS 370 vSaWr 374
                      +SaW+
  Lj3g3v1486970.1 532 ASAWQ 536
                      ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.59138518IPR005202Transcription factor GRAS
PfamPF035141.4E-108164536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEEFNWWLSL YMNENVNQDF AIRRFCPARM ELEQGEEECQ DQEAFLDHEI ELWSSSDATT  60
TTTPCLPSSE NIDDFVDSFI NMDQYDYDNE DHHQESTENK SFDHHFAEAD AYSMVNEEVE  120
IYGDVTITME EEEEIEMTGS FGARSELVPC AEDANLAMDQ GLDLVHMLLA CAEAVGCRDT  180
QQAEFLLSRI WALASPSGDS LQRVSYCFAT GLKCRLLLLP QSAIANGTFT RSSMNVPLIT  240
RENKLEAFHL LYQTTPYIAF GFMAANEAIF QASKGKSSIH IVDLGMEHTL QWPSLIRALV  300
SRPEGPPKLR ITGLIRIEDN NPKLQTRINA LLEEASSLGM PLEFHIISED LTPSLLTVEK  360
LNLRDGEALF VNGILQLHKH IKENRGYLKE ILQSIKKLGP TAITVVEQDT NHNGPFFLGR  420
FLESLHYYSA IFDSLEASMP RNSQQRGKIE RLHFAEEILN IIAYEGADRM ERHERVDQWR  480
RQLGRAGFQV MPLKCTSQAR MMLSVYDCDG YTLSCEKGCL LLGWKGKPVM KASAWQVASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6217153526378Protein SCARECROW
5b3h_A4e-6217153525377Protein SCARECROW
5b3h_D4e-6217153525377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1486970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545708.10.0DELLA protein RGL1
TrEMBLA0A371EPS70.0A0A371EPS7_MUCPR; DELLA protein RGL1 (Fragment)
STRINGGLYMA15G28410.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-79RGA-like 1