PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1427070.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 908aa    MW: 100062 Da    PI: 7.216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1427070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.6e-18322421198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  Lj3g3v1427070.1 322 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLQIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRME-PEG 413
                      89**************************555566778***************9989999999***9.********************876.667 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +l +++++
  Lj3g3v1427070.1 414 KLIMGFRK 421
                      67776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-29314429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-18319421IPR015300DNA-binding pseudobarrel domain
CDDcd100177.34E-22320421No hitNo description
PROSITE profilePS5086311.138322423IPR003340B3 DNA binding domain
PfamPF023622.3E-15322421IPR003340B3 DNA binding domain
SMARTSM010196.0E-20322422IPR003340B3 DNA binding domain
PROSITE profilePS5105013.392587637IPR011124Zinc finger, CW-type
PfamPF074964.5E-9592634IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MESKRCMNVA CAAATSARGR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSKDSGWREC  60
TSCGKRLHCG CVASKSQLQL LDAGGVCCKN CTSNSGLQPI ASNEKPTGSG TSKVKNVSAQ  120
QCTSLANQLN VRGLQLGHYA ENDGLRCWLK PHSVGTEEPS TEIKPEVLPS AGELGSTLIS  180
QFHRDSNGSS KPAKAENCKA DTDMQDIYES LAQTNLSMAL AAPLGISNPF NSAVVDEREL  240
SKTSPPLLLA SRSRHLLPKP PRQTLTPGLE ANAGMVSQIR IARPPAEGRG KSQLLPRYWP  300
RITEQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLQ  360
IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRME PEGKLIMGFR  420
KAKTSAVVQE TLPSNMPNGS HSSETTYSGV YENLPILSGY SGLLQSQKGC SETHLNALSK  480
SWNSAGGDMN WHNIDMPEGR KRDGLPVPPV MVPEKKRTRN IGSKSKRLLF DSQDALELQL  540
TWEEAQDLLR PPPTVKPSVV MIEDHEFEEY DEPPVFGKRS IFVARPTGIN EQWTQCDICS  600
KWRKLPVDVL IPPKWTCVEN QWDQSRCSCS APNELNPREL DKLLRQNKEF KKQRLAASHR  660
QGLERESSGL DALANAAVLG DDASDSGRTP VTTTTRHPRH RPGCSCIVCI QPPSGKGKHK  720
PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEMAQKNQLS WRTKDESEVD STVQHLTPVN  780
GSENETRVPN ALESRSQDCA AEASKGGKLD LNCQPDREDT QAGPNSVSMM GLLEEANLPL  840
ETYLKQNGLT SLISEQQTNS ASNVQAQTAN ESEGRNNEDC NTTSAVHDQQ SSPEEDSEQD  900
KDQNNSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-673004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731742KRRFKTLMMRKK
2731744KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1427070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576446.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK7KCN00.0K7KCN0_SOYBN; Uncharacterized protein
STRINGGLYMA03G04330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]