PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1159150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 303aa    MW: 35003.8 Da    PI: 8.2598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1159150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05141160120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C++C+k+F+r  n++ H+
  Lj3g3v1159150.1 141 FSCSICSKTFNRYNNMQMHM 160
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-5127164No hitNo description
PROSITE profilePS5015710.492141168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-5141160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.13141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SMARTSM00355190188220IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4211245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.31E-5211245No hitNo description
SMARTSM00355160225245IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGLRECNVED KNLCLQTPNF IEWLKPPSSV SLSPTSLTKH EVIRETIQFL PNSSEFIHRK  60
HLEEDHEVFE VKQEKVEQVT VSLHIGLPNT GCSDEKKSVF YHVKEEEEPV KKTLHDECSF  120
NQERRFWIPT PAQILVGPMQ FSCSICSKTF NRYNNMQMHM WGHGSEFRKG PDSLRGTQPA  180
AMLRLPCYCC AQGCKNNINH PRAKPLKDFR TLQTHYKRKH GAKPFMCRKC AKNFAVKGDW  240
RTHEKNCGKL WYCTCGSDFK HKRSLKDHIR SFGKGHSPHP SLEGFDDERE CVTGSDEDEV  300
AHA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.216650.0cell culture
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1159150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959321e-160BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539466.11e-171zinc finger protein WIP3 isoform X1
RefseqXP_028193837.11e-171zinc finger protein WIP3-like
SwissprotQ9SGD11e-121ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A371H7F01e-171A0A371H7F0_MUCPR; Zinc finger protein WIP3 (Fragment)
STRINGGLYMA12G30930.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-114WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]