PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj3g3v1145960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 219aa MW: 25215.7 Da PI: 9.0655 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90.9 | 2.2e-28 | 17 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l pG++F+Ptde lv +yLkkk+ +++l++ ++i+ +d++++ePw Lp k +e++++f+ + + + + r++ sg W+ k+k Lj3g3v1145960.1 17 LLPGYKFDPTDEVLVYFYLKKKAFAQPLPF-QIIPVFDVFQCEPWGLPgGdgK--IfNERKCFFYNTMGRDLE--NLDIRVAGSGEWRVIEKSK 105 579***************************.89***************53333..236789999999999875..5889999************ PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ +++++g ++tL f++ + +++t+Wvmhe+rl Lj3g3v1145960.1 106 DVHIPrNNKVIGKRNTLNFWEVQGACTRRTKWVMHEFRL 144 *999867888***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-35 | 12 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.432 | 17 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 19 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MEDLIMTYED KDGSVRLLPG YKFDPTDEVL VYFYLKKKAF AQPLPFQIIP VFDVFQCEPW 60 GLPGGDGKIF NERKCFFYNT MGRDLENLDI RVAGSGEWRV IEKSKDVHIP RNNKVIGKRN 120 TLNFWEVQGA CTRRTKWVMH EFRLTLIANP SKMANWVVYR IFQNKNAKKV KNARWSDGES 180 SNSGRNARIA TTIDFNVESD SSSSSPLMAH SLSEGNEYP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-20 | 10 | 166 | 8 | 170 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj3g3v1145960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027352865.1 | 2e-66 | NAC domain-containing protein 83-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-31 | NAC domain containing protein 83 |