PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0948220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35721.2 Da PI: 6.7758 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G ++W+++++ g+ R++k+c++rw +yl Lj3g3v0948220.1 13 RGLWSPEEDEKLLKYITIHGHKSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++ Lj3g3v0948220.1 66 RGTFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.071 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.41E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.372 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-16 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.11E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGHRCCSKQK IKRGLWSPEE DEKLLKYITI HGHKSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGTFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL 120 DPQTHNLLAS HKRSSRNIIS HNNNQNSNSI FMLSSQNIPN ADPLGISQYF SSLPKAPPNI 180 VQTPSAIASS EYQTPNNILS NYKTLDFANE LLLTENCFPS CPNVWVSRFD DAEDFGVQTT 240 LEEGTRVQVQ QEKEKSCVEK GIDVREDNYK DSLEMSSFES CNFDFGLLES VLASEFISDH 300 DVNYMDEFAW NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0948220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223087.1 | 1e-157 | transcription factor MYB86 | ||||
TrEMBL | A0A151SWA9 | 1e-152 | A0A151SWA9_CAJCA; Transcription factor MYB86 | ||||
STRING | XP_007149171.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-89 | myb domain protein 67 |