PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0870610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 388aa    MW: 43287.9 Da    PI: 6.6619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0870610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11316361655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L  l Pk+    +k  s a++L  AveYIk+Lq
  Lj3g3v0870610.1 316 SIAERVRRTRISEKIKKLEGLFPKS----DKQTSTADMLDSAVEYIKDLQ 361
                      689*********************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.306310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-14313376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.74E-9314365No hitNo description
Gene3DG3DSA:4.10.280.108.5E-14315375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDSSIGHPQQ HNSGLLRYRS APSSFLASLI GNNNNFGCVN EEAFTSEDHH QGYHLPSSSS  60
EMETILSKLV SSNHRWSNSE PMQEFGDKPV KQEIRESAQE NDYSYGGSQL LYNSEQIQGF  120
ENGSSNGFYS SLGLVNSMVS EKSTQSKMGV SNCSNLIRQK SSPAGFFSNA NGFAATSGLN  180
GTENFSSRLP SSCLTRMPQI AENRNESLEI NCDQSNLENY NSSSKSYMPS FTSEIWDNSA  240
FHSQKTECED EIVFSTSNGL ESQEEDFCYQ NLGLTHHLSV LSPSAKIASI KKFLQIQGSV  300
PCKIRAKRGF ATHPRSIAER VRRTRISEKI KKLEGLFPKS DKQTSTADML DSAVEYIKDL  360
QEQVKTLTDC REKCKCTRNE KQYSRCCT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.224530.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0870610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1485730.0BT148573.1 Lotus japonicus clone JCVI-FLLj-16E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342489.10.0transcription factor bHLH130-like
TrEMBLA0A445JEZ50.0A0A445JEZ5_GLYSO; Transcription factor bHLH130 isoform A
TrEMBLI3T7750.0I3T775_LOTJA; Uncharacterized protein
STRINGGLYMA08G16190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-45bHLH family protein