PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0839400.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 352aa    MW: 39722.3 Da    PI: 5.9937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0839400.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-153380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
  Lj3g3v0839400.1 33 KGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL 80
                     678*******************************************97 PP
2Myb_DNA-binding51.22.8e-1686130147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l+v+++  lG++ W+ Ia++++ gRt++++k++w++ 
  Lj3g3v0839400.1  86 RGAFSPQEEDLIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 130
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-232583IPR009057Homeodomain-like
PROSITE profilePS5129417.1422880IPR017930Myb domain
SuperFamilySSF466893.36E-2831127IPR009057Homeodomain-like
SMARTSM007178.1E-133282IPR001005SANT/Myb domain
PfamPF002494.8E-143380IPR001005SANT/Myb domain
CDDcd001672.37E-113680No hitNo description
PROSITE profilePS5129424.25181135IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2584134IPR009057Homeodomain-like
SMARTSM007177.6E-1685133IPR001005SANT/Myb domain
PfamPF002497.4E-1586130IPR001005SANT/Myb domain
CDDcd001672.65E-1188131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MRKPDLVMAK DRVMNNNNNS SNNNNVVKSK LRKGLWSPEE DEKLLRYMIT KGQGCWSDIA  60
RNAGLQRCGK SCRLRWINYL RPDLKRGAFS PQEEDLIVHL HSILGNRWSQ IAARLPGRTD  120
NEIKNFWNST LKKRFKINNN LSTPSPNNSD SSEPRDHVSG GNNNIIMPNM NEQHDLMTMC  180
MDSSSSTSSS SMQSMRNMPP SMVLPDHQHF DPFFAMTSAP TGFPDLMSAA CFTQFGMVGD  240
DDGDGLHCDY GKMGLESDFS LPPLEISRSN NNIEVPINNN SNVKSHNNNN HFNNSCFNNT  300
DDQIQNSNIV VEDLFGFGNH NGQAGENLRM GEWDLEGLMQ DMSFFPSLDF QV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27311345107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0839400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343049.11e-145transcription factor MYB83
TrEMBLA0A0B2RG481e-141A0A0B2RG48_GLYSO; Transcription factor MYB46
TrEMBLI1N6I21e-141I1N6I2_SOYBN; Uncharacterized protein
STRINGGLYMA19G05080.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-70myb domain protein 83