PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v0821300.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 434aa MW: 48930.6 Da PI: 6.7176

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v0821300.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.3	2.7e-103	28	432	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + + +cA +++sg+ e a+++L+ l ++asp+gd+mqR+a+y+ e+La +++++ +++ kal+ +t ++seel + +lf++ P+lk++++ Lj3g3v0821300.1 28 RIINACAMFIESGSIEYADNALEYLAHIASPYGDAMQRVATYVSEGLAFQVLKNLKGVPKALSLPKTL--STSEELLVKNLFFQFYPFLKIAYV 119 56789******************************************************9766665..489999************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 + +aI ea++gee +H+iD+++s+ +QW+ L+q L +++++p l+iT++++ +ke le+++ L A++++ +++fn+ ++++le+l+ Lj3g3v0821300.1 120 ISSHAIAEAMKGEEVIHVIDLSASEAAQWIYLMQRLKEQQKKPLLLKITAIHE----KKEVLEQMALHLGVEAQKFNFHLQFNA-IVSSLENLD 208 *************************************************....9**********************.7999* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll.............................................desvsleserdevLklvkslsPkvv 239 le+L v++gE la+++vlqlh+ll ++s ++e +L+ +++l+P++v Lj3g3v0821300.1 209 LESLPVEKGEPLAISSVLQLHSLLatddsmsscrnppsesmnqstfkevlgkkkinqssgssllsfpicASSPKMEG----FLNGLRKLQPRLV 298 ************************************************************9888888888888....********* PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 v++eqe++ n++s+ er+ +al++y alf +le+++ ++ eri++Er llg ei+n+vaceg er+erhe+le+W rle aGF+ +++++ Lj3g3v0821300.1 299 VITEQESNVNGSSLTERVDKALDFYGALFKCLESTFLGTAVERIMLERTLLGDEIKNIVACEGVERKERHEKLETWIPRLELAGFGRETIRYDW 392 ****************************************************************************************** PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++qak l+ ++ +gy++ +e+++l+ +W+d+pL+svSaW+ Lj3g3v0821300.1 393 MMQAKKELQGYG-NGYKLLQENKCLFVCWNDKPLFSVSAWK 432 ********.9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.381	1	413	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.5E-101	28	432	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MKLSFGLGSP YAWLKDMNEE DRGKYLARII NACAMFIESG SIEYADNALE YLAHIASPYG 60 DAMQRVATYV SEGLAFQVLK NLKGVPKALS LPKTLSTSEE LLVKNLFFQF YPFLKIAYVI 120 SSHAIAEAMK GEEVIHVIDL SASEAAQWIY LMQRLKEQQK KPLLLKITAI HEKKEVLEQM 180 ALHLGVEAQK FNFHLQFNAI VSSLENLDLE SLPVEKGEPL AISSVLQLHS LLATDDSMSS 240 CRNPPSESMN QSTFKEVLGK KKINQSSGSS LLSFPICASS PKMEGFLNGL RKLQPRLVVI 300 TEQESNVNGS SLTERVDKAL DFYGALFKCL ESTFLGTAVE RIMLERTLLG DEIKNIVACE 360 GVERKERHEK LETWIPRLEL AGFGRETIRY DWMMQAKKEL QGYGNGYKLL QENKCLFVCW 420 NDKPLFSVSA WKVY

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MKLSFGLGSP YAWLKDMNEE DRGKYLARII NACAMFIESG SIEYADNALE YLAHIASPYG  60
DAMQRVATYV SEGLAFQVLK NLKGVPKALS LPKTLSTSEE LLVKNLFFQF YPFLKIAYVI  120
SSHAIAEAMK GEEVIHVIDL SASEAAQWIY LMQRLKEQQK KPLLLKITAI HEKKEVLEQM  180
ALHLGVEAQK FNFHLQFNAI VSSLENLDLE SLPVEKGEPL AISSVLQLHS LLATDDSMSS  240
CRNPPSESMN QSTFKEVLGK KKINQSSGSS LLSFPICASS PKMEGFLNGL RKLQPRLVVI  300
TEQESNVNGS SLTERVDKAL DFYGALFKCL ESTFLGTAVE RIMLERTLLG DEIKNIVACE  360
GVERKERHEK LETWIPRLEL AGFGRETIRY DWMMQAKKEL QGYGNGYKLL QENKCLFVCW  420
NDKPLFSVSA WKVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-35	10	431	2	377	Protein SCARECROW
5b3h_D	7e-35	10	431	2	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v0821300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007149008.1	0.0	hypothetical protein PHAVU_005G032800g
TrEMBL	V7BSM2	0.0	V7BSM2_PHAVU; Uncharacterized protein
STRING	XP_007149008.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14519	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-126	scarecrow-like 3