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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0741510.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 34800.6 Da PI: 7.1327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.7e-09 | 125 | 172 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Lj3g3v0741510.2 125 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 172 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-17 | 119 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.97E-10 | 119 | 176 | No hit | No description |
PROSITE profile | PS50888 | 15.663 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-17 | 121 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-6 | 125 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 127 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEVANSQEES TISEQTPNGE LGVKASDTNP RKRKASSKGK AKEPSNYFNP TKGVEGSGEE 60 TNAKRSKQNE GEGNENSPTK VEVESKGGAR NSGEEKQNKG NTTKPPEPPK DYIHVRARRG 120 QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM 180 KLASVNTRVD FSIESLISKD MFQSNSSLAN TTFPLDSSAL AFYGHQPQQN SAIHNNNIPN 240 RIVDPLDSSL CQNLGLHLPP LNGSNEGASQ FPLTFCEDDL NTIVQMGFGQ IANRKTPVQT 300 QNFNGSNQES HMKIEL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0741510.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027335640.1 | 1e-172 | transcription factor bHLH62-like | ||||
Swissprot | Q9SRT2 | 4e-77 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A151RLX4 | 1e-164 | A0A151RLX4_CAJCA; Transcription factor bHLH62 | ||||
STRING | XP_007134164.1 | 1e-162 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-79 | bHLH family protein |
Publications ? help Back to Top | |||
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