PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0741510.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 387aa    MW: 42710.2 Da    PI: 7.4766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0741510.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.8e-06358384430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h+ +Er RR++i +++  L++l+P +
  Lj3g3v0741510.1 358 SHSLAERVRREKISERMKLLQDLVPGC 384
                      8************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-4352386No hitNo description
SuperFamilySSF474592.22E-7352386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.776354387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-7354386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MENQFFLNAG VSHPMQFEPS PPPNSSMPTW QSLSSAMEIQ SNVLNYPSEQ TQDFFYSSTW  60
DKSTDHHHQP LQFDSALSSM VSSPAESNEN FVMRELIGKL GAVGNSDHEI SPHSHHNSCY  120
STPLSSPPKL NHIAPMMMNH LVKENFPKPM ALNSSVAEFS ADPGFAERAA KFSCFGSRSF  180
NERRSTTSQL VVNNNAELAP QRSATVIENG RLHRVSSSPS LKTFGSQLQD HEKMEVANSQ  240
EESTISEQTP NGELGVKASD TNPRKRKASS KGKAKEPSNY FNPTKGVEGS GEETNAKRSK  300
QNEGEGNENS PTKVEVESKG GARNSGEEKQ NKGNTTKPPE PPKDYIHVRA RRGQATDSHS  360
LAERVRREKI SERMKLLQDL VPGCNKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0741510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-32AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336099.11e-167transcription factor bHLH62-like
TrEMBLA0A371HQB31e-161A0A371HQB3_MUCPR; Transcription factor bHLH62 (Fragment)
STRINGGLYMA18G32560.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-66bHLH family protein