PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0718220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 438aa    MW: 50166.5 Da    PI: 9.2334
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0718220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09294334346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE + l++a  q+G++ Wk+Ia+ ++  + + ++k+ w+ 
  Lj3g3v0718220.1 294 KWTPEELDFLLKAQDQHGSD-WKLIAEGLN--KHRLHVKDTWRR 334
                      8*******************.********8..567788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.011218289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-7220308IPR009057Homeodomain-like
PROSITE profilePS500904.101221287IPR017877Myb-like domain
PROSITE profilePS512949.319290340IPR017930Myb domain
SMARTSM007172.0E-4291338IPR001005SANT/Myb domain
SuperFamilySSF466891.59E-9292349IPR009057Homeodomain-like
CDDcd001670.00123294323No hitNo description
PfamPF139213.5E-11295353No hitNo description
Gene3DG3DSA:1.10.10.605.5E-9309345IPR009057Homeodomain-like
PROSITE profilePS500907.445337406IPR017877Myb-like domain
SMARTSM007172.3341408IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-5346407IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MKMMTKVRRW KLSEETKPDD RGKEMKKNKK EKLIEESESK EEYDKLRSNE GADGDQGKKM  60
KKKKLSDKSK SKNSEFKSNE GEDDERGKEM KKNKKKKSTE ESKSKDEHNK LRSNEGEDGD  120
QGKKMKKKKL SDKSKSKNSE FNSNEGDPSS ASVKEGDAKA CGDVTGVDDQ SKKKKTKKKA  180
KAGTDESSIP AALGETSKPK RVTFSDQVEV CGDDGLVRGK RFTPEEDEKI KEAVCDYIKS  240
HGLGDEGLNM ILYCISHPEV RGCWKEIGAA LPHRPHQSVY YRAHIIFERD EGRKWTPEEL  300
DFLLKAQDQH GSDWKLIAEG LNKHRLHVKD TWRRIRRTNA NKGRWSQDEH QRLFDLVNKD  360
LCARAAEDCR KTKHGMLRDN VSWEAISDEF GTRAIALCCM KWYQQLTSPM VADGIWSDSD  420
DYRLLNALYA LDACSMER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0718220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.21e-152RNA polymerase I termination factor
RefseqXP_006594063.11e-152RNA polymerase I termination factor
RefseqXP_006594064.11e-152RNA polymerase I termination factor
TrEMBLI1LYQ81e-151I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-85MYB_related family protein