PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0718210.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 379aa    MW: 43151.5 Da    PI: 8.9171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0718210.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09235275346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE + l++a  q+G++ Wk+Ia+ ++  + + ++k+ w+ 
  Lj3g3v0718210.1 235 KWTPEELDFLLKAQDQHGSD-WKLIAEGLN--KHRLHVKDTWRR 275
                      8*******************.********8..567788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.011159230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-7161249IPR009057Homeodomain-like
PROSITE profilePS500904.101162228IPR017877Myb-like domain
PROSITE profilePS512949.319231281IPR017930Myb domain
SMARTSM007172.0E-4232279IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-9233290IPR009057Homeodomain-like
CDDcd001676.71E-4235264No hitNo description
PfamPF139212.8E-11236294No hitNo description
Gene3DG3DSA:1.10.10.604.4E-9250286IPR009057Homeodomain-like
PROSITE profilePS500907.445278347IPR017877Myb-like domain
SMARTSM007172.3282349IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-6287348IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MKKKKLSDKS KSKNSEFKSN EGEDDERGKE MKKNKKKKST EESKSKDEHN KLRSNEGEDG  60
DQGKKMKKKK LSDKSKSKNS EFNSNEGDPS SASVKEGDAK ACGDVTGVDD QSKKKKTKKK  120
AKAGTDESSI PAALGETSKP KRVTFSDQVE VCGDDGLVRG KRFTPEEDEK IKEAVCDYIK  180
SHGLGDEGLN MILYCISHPE VRGCWKEIGA ALPHRPHQSV YYRAHIIFER DEGRKWTPEE  240
LDFLLKAQDQ HGSDWKLIAE GLNKHRLHVK DTWRRIRRTN ANKGRWSQDE HQRLFDLVNK  300
DLCARAAEDC RKTKHGMLRD NVSWEAISDE FGTRAIALCC MKWYQQLTSP MVADGIWSDS  360
DDYRLLNALY ALDACSMER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0718210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.21e-151RNA polymerase I termination factor
RefseqXP_006594063.11e-151RNA polymerase I termination factor
RefseqXP_006594064.11e-151RNA polymerase I termination factor
RefseqXP_028198132.11e-151RNA polymerase I termination factor
RefseqXP_028198133.11e-151RNA polymerase I termination factor
RefseqXP_028198134.11e-151RNA polymerase I termination factor
RefseqXP_028198135.11e-151RNA polymerase I termination factor
TrEMBLA0A0B2SVJ41e-150A0A0B2SVJ4_GLYSO; Cyclin-D-binding Myb-like transcription factor 1
TrEMBLI1LYQ81e-150I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.18e-86MYB_related family protein