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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0681720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 293aa MW: 32898.7 Da PI: 7.0064 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.9e-09 | 17 | 40 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+tIa+ ++ gRt++++k++w+++ Lj3g3v0681720.1 17 RWSTIAANLQ-GRTDNEIKNYWNTH 40 6*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.713 | 1 | 45 | IPR017930 | Myb domain |
CDD | cd00167 | 3.13E-6 | 13 | 41 | No hit | No description |
SuperFamily | SSF46689 | 1.09E-7 | 15 | 49 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-12 | 16 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 17 | 40 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MKLLLYLNGN FVYVMHRWST IAANLQGRTD NEIKNYWNTH IKKKLLKMGL DPVTHTPRLD 60 VLQLASILNS SLYNNSAQFN NPGLFGMERV VNPSQLQLLN LVTTLLSCQN TNQDVWNTNN 120 YQQNQLGGST QWQHQTQCSQ PMQLDNSIHA FQPNQVNEEN HCTTSNPLHI LEPPQLMKTN 180 LEHQISPIAS PFNHQNPMQN LLQYNGGFTS NRKRPEPSSA TQSFSSLLCN SEGMPNFNLS 240 SLLSSTPSSS SPSTLNSSSS TTFVKGTNED ERDTYGNMFM YNISNGLNDS GLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0681720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006708 | 0.0 | AP006708.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT09I23, TM0590c, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027339923.1 | 9e-93 | transcription factor MYB41 | ||||
TrEMBL | A0A445IB52 | 5e-83 | A0A445IB52_GLYSO; Transcription factor MYB102 | ||||
TrEMBL | K7M2E6 | 5e-83 | K7M2E6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G35810.2 | 8e-84 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15120 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 3e-27 | MYB-like 102 |