PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0397240.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 309aa    MW: 35572.9 Da    PI: 7.9529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0397240.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.8e-50241523128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeel+ +yL++k+++k+++l e ik++diyk++PwdLp ++ +++ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s 
  Lj3g3v0397240.1  24 PGFRFHPTDEELLGFYLRRKLDNKPITL-ELIKQIDIYKYDPWDLPkASSSGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSL 116
                      9*************************99.99***************445666889**************************************8 PP

              NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++  +glkktLv+y+g+a kg+ktdW+mhe+rl
  Lj3g3v0397240.1 117 ggeGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 152
                      6555556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5619183IPR003441NAC domain
PROSITE profilePS5100554.54322183IPR003441NAC domain
PfamPF023652.5E-2524152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVLDNFKKDI DCDEYMEDEE VPLPGFRFHP TDEELLGFYL RRKLDNKPIT LELIKQIDIY  60
KYDPWDLPKA SSSGGEKEWY FFCKRGRKYR NSIRPNRVTG SGFWKATGID KPVYSLGGEG  120
NDCIGLKKTL VYYRGSAGKG TKTDWMMHEF RLPSNADHTN PHNSNAAVAQ EAEIWTLCRI  180
FKRSMSHRKQ YTPDLRQLAA KRASTDKITK MRSLECDYTN QEAYINFGTN FGHYANDHRH  240
VINNNTSSDQ RHHHQVHVGL LNSPAAQPPR LSAPSSDFWN SPAANDFFTF ENWDELGSVV  300
KFAADSPMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-482418919171NO APICAL MERISTEM PROTEIN
1ut4_B2e-482418919171NO APICAL MERISTEM PROTEIN
1ut7_A2e-482418919171NO APICAL MERISTEM PROTEIN
1ut7_B2e-482418919171NO APICAL MERISTEM PROTEIN
3swm_A2e-482418922174NAC domain-containing protein 19
3swm_B2e-482418922174NAC domain-containing protein 19
3swm_C2e-482418922174NAC domain-containing protein 19
3swm_D2e-482418922174NAC domain-containing protein 19
3swp_A2e-482418922174NAC domain-containing protein 19
3swp_B2e-482418922174NAC domain-containing protein 19
3swp_C2e-482418922174NAC domain-containing protein 19
3swp_D2e-482418922174NAC domain-containing protein 19
4dul_A2e-482418919171NAC domain-containing protein 19
4dul_B2e-482418919171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0397240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063660.0AP006366.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT35C03, TM0176a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356420.11e-173transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-91NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLV7BTH21e-149V7BTH2_PHAVU; Uncharacterized protein
STRINGXP_007149303.11e-149(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-93NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]