PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0338970.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YA
Protein Properties Length: 314aa    MW: 34543.4 Da    PI: 9.237
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0338970.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.43.8e-31179235158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVN+KQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg gGrF
  Lj3g3v0338970.3 179 EEPIYVNSKQYHAILRRRQYRAKLEAHNKL-IKDRKPYLHESRHLHALKRARGVGGRF 235
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-36177238IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.233178238IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.3E-26180235IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.7E-23181203IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860183203IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.7E-23212235IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKCLCEKDPG LCSAHPSSTH VLGGPSWATS SESEVPHSSI SNSLSLKVDV LPQQCHKSKA  60
LSFQFQEQDS SSSQSSGQSY PEVGSAQSGQ ISFQHSSSTG SAFSNAEGKS MGYLVRSSMA  120
SRDFTYPPVL DHSQALAHAA FYYADPCYTG AAYAPQSKIH HAQLMGTGVR VPLPSDYTEE  180
PIYVNSKQYH AILRRRQYRA KLEAHNKLIK DRKPYLHESR HLHALKRARG VGGRFLNTKQ  240
LEESKLTSPN HGLKFSGSTR LNLSGNVPES NETHHQDSDF RLCSYPSHTG RNMQDYTVDK  300
GGGGANQRRL SVLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21178249172NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0338970.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7755281e-36FJ775528.1 Glycine max CCAAT-binding transcription factor family protein (NF-YA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571402.11e-137nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH21e-46NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A1S3E6G51e-135A0A1S3E6G5_CICAR; nuclear transcription factor Y subunit A-3-like
STRINGXP_004486861.11e-136(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-42nuclear factor Y, subunit A8