PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0323560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 285aa    MW: 31654.9 Da    PI: 10.0774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0323560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE++ l ++v+++G g Wk I +        + R+  ++k++w+++
  Lj3g3v0323560.1  5 KQKWTAEEEDALHRGVQKYGAGKWKNILKDPEfapslTSRSNIDLKDKWRNL 56
                     79************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.109162IPR017930Myb domain
SuperFamilySSF466896.39E-16258IPR009057Homeodomain-like
SMARTSM007175.6E-8459IPR001005SANT/Myb domain
PfamPF002492.1E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-14556IPR009057Homeodomain-like
CDDcd116605.17E-21657No hitNo description
SMARTSM005267.6E-13114181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.431116186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.6E-13117188IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.0E-10118179IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-14118196IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGNQKQKWTA EEEDALHRGV QKYGAGKWKN ILKDPEFAPS LTSRSNIDLK DKWRNLNVVT  60
GQGSNIKSRT SKPKLTAPST PVPNQQNATP SVQNVATPKV PTPSQNSAEK DHEAKVPPRY  120
NAMIFEALSS IKDADGSDMN AIVSFIEQKH TNTLHQNFRK ALGARLRKLV HQGKLEKVQN  180
CYKIKKDTPS GPRLPSPKSP VPEQKDLRPQ QSPTSSFVTC NEIIKDAADT AAYRVADAEN  240
KSFLAAEAMR EVERISRLAE DTVSTLQLVK EIYEKCSRGE IVLLA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.20220.0floral bud| pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0323560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1438611e-171BT143861.1 Lotus japonicus clone JCVI-FLLj-9H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028795004.11e-113telomere repeat-binding factor 4-like
RefseqXP_028807403.11e-113telomere repeat-binding factor 4-like
TrEMBLA0A445JQD31e-111A0A445JQD3_GLYSO; Telomere repeat-binding factor 5 isoform A
TrEMBLI1KG921e-111I1KG92_SOYBN; Uncharacterized protein
STRINGGLYMA07G00930.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-62MYB_related family protein