PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v0323160.3

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 557aa MW: 61704 Da PI: 8.677

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v0323160.3	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	75	95	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Lj3g3v0323160.3 75 CEICNKGFQRDQNLQLHRRGH 95 *******************88 PP
2	zf-C2H2	12.6	0.00042	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Lj3g3v0323160.3 149 WKCEKCSKKYAVQSDWKAHSKTC 171 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.6E-5	72	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.21E-7	72	95	No hit	No description
SMART	SM00355	0.11	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	73	95	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.21E-7	144	169	No hit	No description
SMART	SM00355	140	149	169	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MSNLTCASGE ASANSSGNKT EITGTDYPQQ CFAPPPSQTQ PPLKRKRNLP GNPDPEAEVV 60 AMSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEIR RKVYVCPEPT 120 CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AEESARVVAI PNNNNSLLPS PTTPSHQMNL QAHQDIIHGG 240 NFSLKKEHQS LIPPWLAPPH SNIDLSSSSS SSIFSQTQNL NHHHHHENPN PRLGPTLPGY 300 QPPAPPAHMS ATALLQKAAQ MGATMTKTGS SSQPMIRTHH MSPSADSATN ANNINNNISS 360 GNFGNLNLST CEDQMVTMTT TTAAAATTGV STSFLHHVMD SFPSGFEGTS FEDTFGPGGI 420 LNSNNKDIDS ITTSVVKGGN NEGLTRDFLG LRPLSHSDIL TIASMGNCMN HDQQNQSQKQ 480 WQVWNEHSTK EDQRFCFCFS FQIAGDGEEA KFQSHPSLDL HLFHHFLRLR SCFRSSSFSP 540 FTPPYPSFSS QQSQRKV

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MSNLTCASGE ASANSSGNKT EITGTDYPQQ CFAPPPSQTQ PPLKRKRNLP GNPDPEAEVV  60
AMSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEIR RKVYVCPEPT  120
CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARVVAI PNNNNSLLPS PTTPSHQMNL QAHQDIIHGG  240
NFSLKKEHQS LIPPWLAPPH SNIDLSSSSS SSIFSQTQNL NHHHHHENPN PRLGPTLPGY  300
QPPAPPAHMS ATALLQKAAQ MGATMTKTGS SSQPMIRTHH MSPSADSATN ANNINNNISS  360
GNFGNLNLST CEDQMVTMTT TTAAAATTGV STSFLHHVMD SFPSGFEGTS FEDTFGPGGI  420
LNSNNKDIDS ITTSVVKGGN NEGLTRDFLG LRPLSHSDIL TIASMGNCMN HDQQNQSQKQ  480
WQVWNEHSTK EDQRFCFCFS FQIAGDGEEA KFQSHPSLDL HLFHHFLRLR SCFRSSSFSP  540
FTPPYPSFSS QQSQRKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-38	145	214	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-38	145	214	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.4605	0.0	pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v0323160.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148918	1e-138	AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027340092.1	0.0	protein indeterminate-domain 11-like isoform X2
Refseq	XP_027340093.1	0.0	protein indeterminate-domain 11-like isoform X2
Refseq	XP_027340094.1	0.0	protein indeterminate-domain 11-like isoform X2
Refseq	XP_027340095.1	0.0	protein indeterminate-domain 11-like isoform X2
Refseq	XP_027340096.1	0.0	protein indeterminate-domain 11-like isoform X2
Swissprot	Q8H1F5	1e-130	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A371FTQ7	0.0	A0A371FTQ7_MUCPR; Protein indeterminate-domain 7
STRING	AES67848	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-104	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]