PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v0028580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 321aa MW: 36152.7 Da PI: 5.9532 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.3e-11 | 126 | 173 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L +P + kK +K +i+ A++Y+k+L+ Lj3g3v0028580.1 126 TDHVMAERKRRQDLTEKFIALSATIPGL-----KKTDKTSIVHGAIDYVKQLK 173 6799************************.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.41E-15 | 123 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.392 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 126 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 126 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.44E-8 | 128 | 176 | No hit | No description |
SMART | SM00353 | 7.7E-11 | 129 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MMEQSWENFP LHQMEILGSS DEDEDEFLRD ILLPPDLSPD HESQSLVVQK KLQPRTFILS 60 FDNSTILPAS ATSERGTHSN SKSSNNSSLS SRRKRNLEKN HVSLEPKLPS TTTQRGKKNR 120 SDSQTTDHVM AERKRRQDLT EKFIALSATI PGLKKTDKTS IVHGAIDYVK QLKERVTELE 180 QQGNGRGKES MIVLKKMNLS ANREDTPTTS SETNNSEDLC RPRELFPDVK ARVLENEVLI 240 VIHCERENGI ELKILDLLEN LRLCVTGSSV LPFGNSTLSI TIIAQIGDAC ENTTVPDIVD 300 NVRQALLNDV TTDRFRPQLS Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v0028580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595181.1 | 1e-106 | transcription factor bHLH25 | ||||
Refseq | XP_028188261.1 | 1e-106 | transcription factor bHLH25-like | ||||
TrEMBL | K7M402 | 1e-104 | K7M402_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G44594.1 | 1e-105 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13110 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 2e-38 | bHLH family protein |