PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0028580.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 321aa    MW: 36152.7 Da    PI: 5.9532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0028580.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11126173355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ ++f  L   +P +     kK +K +i+  A++Y+k+L+
  Lj3g3v0028580.1 126 TDHVMAERKRRQDLTEKFIALSATIPGL-----KKTDKTSIVHGAIDYVKQLK 173
                      6799************************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-15123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.392123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14126184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8126172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-8128176No hitNo description
SMARTSM003537.7E-11129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMEQSWENFP LHQMEILGSS DEDEDEFLRD ILLPPDLSPD HESQSLVVQK KLQPRTFILS  60
FDNSTILPAS ATSERGTHSN SKSSNNSSLS SRRKRNLEKN HVSLEPKLPS TTTQRGKKNR  120
SDSQTTDHVM AERKRRQDLT EKFIALSATI PGLKKTDKTS IVHGAIDYVK QLKERVTELE  180
QQGNGRGKES MIVLKKMNLS ANREDTPTTS SETNNSEDLC RPRELFPDVK ARVLENEVLI  240
VIHCERENGI ELKILDLLEN LRLCVTGSSV LPFGNSTLSI TIIAQIGDAC ENTTVPDIVD  300
NVRQALLNDV TTDRFRPQLS Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0028580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595181.11e-106transcription factor bHLH25
RefseqXP_028188261.11e-106transcription factor bHLH25-like
TrEMBLK7M4021e-104K7M402_SOYBN; Uncharacterized protein
STRINGGLYMA13G44594.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-38bHLH family protein