PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0014460.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 240aa    MW: 26867 Da    PI: 8.0267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0014460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000297119123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Lj3g3v0014460.1  97 FSCNYCQRQFYSSQALGGHQNAH 119
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-694124No hitNo description
Gene3DG3DSA:3.30.160.609.3E-495123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42797124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDLLRSEPCP SDNLNISFSD SISSFDIQTE KRQREKEDQQ HPHESAPRLL LDLSLPSEYS  60
GENSKPELNL INCFDTNLST NSSESVVHGN EVEPRIFSCN YCQRQFYSSQ ALGGHQNAHK  120
RERTLAKRGH RVSSVDFGQR YSSMASLPLH GIQVHSMIHK PSYKTPFFGW KKQRKEIGNF  180
GGVGAEVPES SLAGGTTRLG KFSPRMVPEG FGGYWLGGVT ATHLNTKQDE LQKLDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0014460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343912.11e-107zinc finger protein 1-like
TrEMBLA0A151R5P81e-103A0A151R5P8_CAJCA; Zinc finger protein 3
STRINGGLYMA13G44670.21e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-33zinc-finger protein 1