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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v3249980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SBP | ||||||||
Protein Properties | Length: 189aa MW: 21603.4 Da PI: 4.9003 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 32.8 | 1.8e-10 | 103 | 125 | 2 | 24 |
-SSTT-----TT--HHHHHTT-- CS SBP 2 CqvegCeadlseakeyhrrhkvC 24 Cqve+C+adlseak+yhrrhkv Lj2g3v3249980.1 103 CQVENCDADLSEAKQYHRRHKVF 125 *********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.3E-11 | 95 | 134 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-9 | 101 | 136 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.3E-5 | 103 | 124 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MTNDVTLGFK DRLDGETKML RAITNTLCFH ALGTMSCGLV NDHQDGEAKM WYEGKRTLRY 60 KEYDEEEEEE EEDEEEEGRR KRVVTDLYSK RGSKGGSSVP PSCQVENCDA DLSEAKQYHR 120 RHKVFPRGFY PSKVLMRPVL EDSMSYQNLM TLKGVVGGVW LGIMRGVAKM QLTIMDNDFI 180 NEMGIEASI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v3249980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159344.1 | 2e-33 | hypothetical protein PHAVU_002G230300g | ||||
TrEMBL | V7CPQ3 | 4e-32 | V7CPQ3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159344.1 | 6e-33 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22691 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 9e-08 | squamosa promoter binding protein-like 14 |