PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3245800.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 179aa    MW: 20903.4 Da    PI: 9.6182
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3245800.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS183.41.6e-56217978253
             GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                      l+a+k++  +sP+ ++++++aN++Il+ v++ + vHiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rLak++
  Lj2g3v3245800.1   2 LKAYKVYITASPFWRMTNFLANRTILKLVQNVSSVHIIDFGIFYGFQWPCLIQRLSERPGGPPKLRITGIDLPQPGfrPTERVEETGWRLAKYC 95 
                      689************************************************************************9****************** PP

             GRAS 170 eelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                      +++gvpfe+n+ +a+++e+++le+L+++  +E+++Vn+ ++l++l de+v+++ +rd+vLkl+++++P+++++   +  +n++ F
  Lj2g3v3245800.1  96 KRFGVPFEYNF-LAQKWETIRLEDLKIDMeEEVTVVNCLYRLKNLSDETVTVNCPRDAVLKLIRRVNPNIFIHGVINGTYNAPFF 179
                      ***********.6**************9989999**************************************9999999988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.3841179IPR005202Transcription factor GRAS
PfamPF035145.7E-542179IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MLKAYKVYIT ASPFWRMTNF LANRTILKLV QNVSSVHIID FGIFYGFQWP CLIQRLSERP  60
GGPPKLRITG IDLPQPGFRP TERVEETGWR LAKYCKRFGV PFEYNFLAQK WETIRLEDLK  120
IDMEEEVTVV NCLYRLKNLS DETVTVNCPR DAVLKLIRRV NPNIFIHGVI NGTYNAPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-23114695248Protein SCARECROW
5b3h_A7e-23114694247Protein SCARECROW
5b3h_D7e-23114694247Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.162840.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3245800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507177.11e-111scarecrow-like protein 30
SwissprotQ9XE585e-78SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S2YMW01e-110A0A1S2YMW0_CICAR; scarecrow-like protein 30
STRINGXP_004507177.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-80SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]