PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Function |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Lj2g3v3245790.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 107aa MW: 12568.5 Da PI: 8.7198

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3245790.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	93.3	3.7e-29	2	104	271	373
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 +ea++pre++ r + E+ l+gr++vnv+acegaer+er et+++W+ r ++aGFk++pl + + +k +++k + + + v+e+ +++++gWk+ Lj2g3v3245790.1 2 FEATVPREDKYRLMFEEGLFGRDAVNVIACEGAERVERPETYKQWQVRNRRAGFKQLPLAPELSSRVKEMVKKEYHKDFVVDEDGKWVLQGWKG 95 689**********************************************************************888************ PP GRAS 365 rpLvsvSaW 373 r L +vS+W Lj2g3v3245790.1 96 RILHAVSCW 104 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.832	1	85	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-26	2	104	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MFEATVPRED KYRLMFEEGL FGRDAVNVIA CEGAERVERP ETYKQWQVRN RRAGFKQLPL 60 APELSSRVKE MVKKEYHKDF VVDEDGKWVL QGWKGRILHA VSCWVPA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.16284	1e-177	pod

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3245790.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507177.1	2e-64	scarecrow-like protein 30
Refseq	XP_029127109.1	8e-65	scarecrow-like protein 34
Swissprot	P0C884	7e-43	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	A0A2K3MTJ4	6e-65	A0A2K3MTJ4_TRIPR; SCARECROW-like protein 14-like
STRING	XP_004507177.1	8e-64	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14801	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	3e-45	GRAS family protein