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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v3084320.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 25157.8 Da PI: 8.0121 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.4 | 3.1e-15 | 48 | 94 | 2 | 48 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp 48 pGfrFhPtdeelv +yL++k+e+k++ + e ike d+yk++Pw+ Lj2g3v3084320.2 48 LPGFRFHPTDEELVGFYLRRKLEKKSHVF-ELIKESiDLYKYDPWNHL 94 69************************777.7777766********843 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-13 | 46 | 92 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.638 | 47 | 202 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-8 | 49 | 96 | IPR003441 | NAC domain |
SMART | SM00512 | 1.2E-4 | 100 | 208 | IPR001232 | S-phase kinase-associated protein 1-like |
Pfam | PF03931 | 1.3E-10 | 102 | 162 | IPR016073 | SKP1 component, POZ domain |
Gene3D | G3DSA:3.30.710.10 | 6.3E-20 | 102 | 219 | No hit | No description |
SuperFamily | SSF54695 | 1.33E-8 | 102 | 162 | IPR011333 | SKP1/BTB/POZ domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MADHSENSNP KHRIDCVVHA PLPYSSVVDK MGVAKLHDLD DKKEEVVLPG FRFHPTDEEL 60 VGFYLRRKLE KKSHVFELIK ESIDLYKYDP WNHLSSNFQE NLISLKSSDN EVLKMNKRAA 120 TSQSKVLRDV VDSTGGRDEI PVPGVTSLIL SKITSFCKKK HKFDTQLNII TELLKCTMDS 180 YKACISSFVK DNQSIFSQLH DAANYLNIPN LMELTSRTMR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2955 | 0.0 | cell culture| flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v3084320.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143388 | 0.0 | BT143388.1 Lotus japonicus clone JCVI-FLLj-1E1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | I3SSE0 | 1e-142 | I3SSE0_LOTJA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 8e-19 | NAC domain containing protein 42 |