PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Lj2g3v3084320.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 191aa MW: 21967.1 Da PI: 7.5542

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3084320.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.3	3.4e-15	19	64	2	47
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdL 47 pGfrFhPtdeelv +yL++k+e+k++ + e ike d+yk++Pw+ Lj2g3v3084320.1 19 LPGFRFHPTDEELVGFYLRRKLEKKSHVF-ELIKESiDLYKYDPWNH 64 69**********************777.7777766******84 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-13	16	63	IPR003441	NAC domain
PROSITE profile	PS51005	11.638	18	173	IPR003441	NAC domain
Pfam	PF02365	1.3E-8	20	67	IPR003441	NAC domain
SMART	SM00512	1.2E-4	71	179	IPR001232	S-phase kinase-associated protein 1-like
Pfam	PF03931	1.0E-10	73	133	IPR016073	SKP1 component, POZ domain
Gene3D	G3DSA:3.30.710.10	4.3E-20	73	190	No hit	No description
SuperFamily	SSF54695	1.02E-8	73	133	IPR011333	SKP1/BTB/POZ domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDVAKLQDSD DKKEDEVVLP GFRFHPTDEE LVGFYLRRKL EKKSHVFELI KESIDLYKYD 60 PWNHLSSNFQ ENLISLKSSD NEVLKMNKRA ATSQSKVLRD VVDSTGGRDE IPVPGVTSLI 120 LSKITSFCKK KHKFDTQLNI ITELLKCTMD SYKACISSFV KDNQSIFSQL HDAANYLNIP 180 NLMELTSRTM R

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.2955	0.0	cell culture\| flower\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3084320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143388	0.0	BT143388.1 Lotus japonicus clone JCVI-FLLj-1E1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I3SSE0	1e-129	I3SSE0_LOTJA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-20	NAC domain containing protein 42