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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v3069800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ARF | ||||||||
Protein Properties | Length: 877aa MW: 96973.4 Da PI: 6.4421 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.5e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ Lj2g3v3069800.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLNDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 218 99*****************************8544444..48************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Lj2g3v3069800.1 219 EKNQLLLGIRRA 230 99999****997 PP | |||||||
2 | Auxin_resp | 119 | 3.9e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr+ Gt++g+sdld+vrWpnS+Wrs+k Lj2g3v3069800.1 255 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYVGTITGISDLDSVRWPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-48 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-41 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.11E-22 | 128 | 229 | No hit | No description |
SMART | SM01019 | 3.9E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.1E-34 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-8 | 729 | 825 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.85E-8 | 734 | 818 | No hit | No description |
PROSITE profile | PS51745 | 23.473 | 741 | 827 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MKLSSSGLDQ QLEEEGEKKC LNSELWHACA GPLVSLPPIG SRVVYFPQGH SEQVAASTNR 60 EVDAHIPNYP NLPPQLICQL HNETMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT 120 PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLNDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRSQTIMPSS 240 VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYVGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSS FPLRLRRPWL SGPPSLYGLK DGDMSISSPL LWLQGGLGDQ GMQSLNFQGL 420 GVTPWVQPRL DASTPGLHPE LYQAMTSAAF QEMRTMNPSK SSSQSMQFQQ ATNVPSDHAS 480 QVQRPVLSQS QPQNTFVHNF QENQVPTQSQ LLQQQLHRYH PYSDQRQQQQ LKNLPVQQQL 540 QNVISPLSNL SSGTQSHSPP MQALASHCQQ QSFPNPIRNH ISSSDVSTFQ SLLGSFSQDG 600 TSQFLNLNGS NSVPTAAANC VLPQVVNMGT SQSNVSELSA LPPFPGREHS AYQGAADPQS 660 NLPFGINVDP SSLMLQNGMQ NLRNIGNVND SLSLPFSASN CDGVTGTDFP LSSNIAASSC 720 VDESGFLQSS ENVDQANTPT GTFVKVHKSG SFGRSLDISK FSSYDELRSE LARMFGLEGQ 780 LEDPMTLRSG WQLVFVDREN DILLLGDDPW QEFVNNVSYI KILSPLEVQE MGRSVATSTS 840 SPGHKLSNNG NSCDDYASRQ ELRSSRNGVA PMGSFHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 13 | 359 | 42 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.4218 | 0.0 | floral bud| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v3069800.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017429847.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Refseq | XP_017429848.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X2 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | V7B6L0 | 0.0 | V7B6L0_PHAVU; Auxin response factor | ||||
STRING | XP_007141460.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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