PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj2g3v3055290.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 500aa MW: 56603.8 Da PI: 8.0955 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 20 | 75 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql +Le+++ ++yps+e++ +LA+++gLte+qV+ WF+ rR k+k+ Lj2g3v3055290.3 20 KKRKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 2 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-18 | 15 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-19 | 18 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.03E-17 | 20 | 75 | No hit | No description |
Pfam | PF00046 | 1.5E-16 | 20 | 75 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 500 aa Download sequence Send to blast |
MEESSEVKSE ENKVSMEKNK KRKLKTPAQL MALEKFYDAH KYPSEEKKLK LAEEIGLTEK 60 QVSGWFCHRR LKDKRLLKDE AVANGRQDRS SGVIQDRGSG LGQDSCGSSK HGDNKHLDPK 120 EAESHGIYNQ DISVADMTYG RRDYYPENGR GMDDTSSESS SFLQERLYSQ GQDPYDMEPS 180 RHRTPSGSLP PLNPKSATKM GYKPSGYLKV KGEIEHAAIT AVKKQLGRHY LEDGPLLGVE 240 FDPLPPGAFE FQTEYPVHEA YHVANPVHLN SPEVPAVKRQ PNLSSRHDSY YTKFSSQDSH 300 MEGVDFGFLQ DYDVQDTQDK KARQDINYSQ TFYNDANNFP GRNSSQDLYE DSTREVSAYN 360 SSKNHKMGKG NKRGVEGMRS YSTSNHRDHY EDDIAVKPTD ILLLEYDNID PKNVQRSEHV 420 KSKPSNSIRK SRVPMDPEER GLSTRMAKEE VFKGDRKAKK KYRNADGVGM LSNEIAVAKR 480 VKAGTPQEYN VKQSPVPGNC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj2g3v3055290.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545402.1 | 0.0 | uncharacterized protein LOC100803515 | ||||
Refseq | XP_028201159.1 | 0.0 | uncharacterized protein LOC114385327 | ||||
TrEMBL | A0A445H100 | 0.0 | A0A445H100_GLYSO; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | I1M740 | 0.0 | I1M740_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G03850.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-75 | HB-other family protein |