PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3034020.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 309aa    MW: 34821 Da    PI: 6.5209
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3034020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-17193283498
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      vl ps+  + ++++lp  fae + +g++     ++l+  +gr+W v++ yr+++    l++GW +F  +n+L egD++vF+l ++++  l v++
  Lj2g3v3034020.1 193 VLRPSYLYRGCIMYLPSCFAEMNlNGVSG---FIKLQVADGRQWPVRCLYRGGR--AKLSQGWFDFTLENNLGEGDVCVFELLRTRDVVLQVTL 281
                      7889****************999866643...599*************665555..66***********************9999998899999 PP

                      E- CS
               B3  97 fr 98 
                      fr
  Lj2g3v3034020.1 282 FR 283
                      87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-23182285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-24183284IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-23188283No hitNo description
SMARTSM010196.0E-19190285IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902190285IPR003340B3 DNA binding domain
PfamPF023621.2E-15193283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSTSEVNYQS AVRSHNEGPI ITNYHHIFDD MEDTDSLEFM DSSPSNLTPS ALQNKVLGHL  60
TPGKNQSPAP GKSAFPSKDV GVQFNSQGNH STRDIGVQFN VVEFKRSFEE LKLRYPNNGE  120
GVSKTVKRKR KSEPKTVDGQ EPSAENEEEE EMRYRFYESA SARKRATVTA EERERAVNEA  180
KAFEPANPFC RVVLRPSYLY RGCIMYLPSC FAEMNLNGVS GFIKLQVADG RQWPVRCLYR  240
GGRAKLSQGW FDFTLENNLG EGDVCVFELL RTRDVVLQVT LFRLSQEVGL LEAPPMQQPS  300
PNVSHNQNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-7215528815146B3 domain-containing transcription factor VRN1
4i1k_B6e-7215528815146B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.52970.0cell culture| floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3034020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1441300.0BT144130.1 Lotus japonicus clone JCVI-FLLj-16J9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498177.11e-151B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S2Y2521e-150A0A1S2Y252_CICAR; B3 domain-containing transcription factor VRN1-like
STRINGXP_004498177.11e-151(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-75B3 family protein