PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3019660.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HSF
Protein Properties Length: 274aa    MW: 31922.1 Da    PI: 6.9045
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3019660.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35261172102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw +++ +f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F+kg k+ll+
  Lj2g3v3019660.1  26 FLTKTYQLVDDPHTDHIVSWGDDEATFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGAKHLLC 110
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k+
  Lj2g3v3019660.1 111 EIHRRKT 117
                      *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3817110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAFTLDRCED NMVFTMESQK SVPAPFLTKT YQLVDDPHTD HIVSWGDDEA TFIVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKIV ADRWEFANEY FRKGAKHLLC EIHRRKTPHH  120
YQQNYHEVQL QPPQFLQPAD ESFCWIDNTP LPSPKPGTDI LTELSEDNQR LRRKNLMLLS  180
ELTHMKNLYN DIIYFIQNHV SPAQQRSSNN AIFKVVELDS SSPQSPNVII PTKSCAMEKS  240
FITSSEDSNN SVKLFGVPLC GKKRLHQSNL DQQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-211611711122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3019660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925440.0BT092544.1 Soybean clone JCVI-FLGm-11O9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368557.11e-166heat stress transcription factor B-4b-like
SwissprotQ7XHZ06e-89HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A1S3UDR21e-163A0A1S3UDR2_VIGRR; heat stress transcription factor B-4b
STRINGXP_007141514.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-87heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]