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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2900220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TALE | ||||||||
Protein Properties | Length: 305aa MW: 35083.9 Da PI: 7.1507 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 235 | 269 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps+++++ LA+++gL+ +q+ +WF N+R ++ Lj2g3v2900220.1 235 KWPYPSESQKQALAESTGLDLKQINNWFINQRKRH 269 569*****************************885 PP | |||||||
2 | ELK | 38.5 | 2.5e-13 | 189 | 210 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLk+EF+ Lj2g3v2900220.1 189 ELKVQLLRKYSGYLGSLKKEFL 210 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.6E-15 | 56 | 100 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.3E-19 | 58 | 99 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-24 | 108 | 159 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.9E-21 | 112 | 157 | IPR005541 | KNOX2 |
SMART | SM01188 | 7.1E-7 | 189 | 210 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.139 | 189 | 209 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.9E-9 | 189 | 210 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.228 | 209 | 272 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-12 | 211 | 276 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-19 | 211 | 283 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 214 | 275 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.47E-12 | 221 | 273 | No hit | No description |
Pfam | PF05920 | 2.6E-17 | 229 | 268 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 247 | 270 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDMMNMETNR KFLSLPLSNN SNNNSGPQMR RVPVVMSNAQ DHNYSSQQQQ DHNTSSSVRD 60 KIMAHPLFPR LLSSYLNCLK VGAPPEVVAS LEESCAKCES LNASGRTGGG SLGEDPALDQ 120 FMEAYCEMLI KYEHELTKPF KEAMLFFSRI ECQLKALAVS TEFGQSESSS QNEVDVHENN 180 LDTQADDREL KVQLLRKYSG YLGSLKKEFL KKKKNGKLPK EARQQLLDWW NRHYKWPYPS 240 ESQKQALAES TGLDLKQINN WFINQRKRHW KPSEDMQFAV MDATNYYMEN VMCKPFPMDA 300 MPMLL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5678 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2900220.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147795 | 0.0 | BT147795.1 Lotus japonicus clone JCVI-FLLj-16B16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213001.1 | 0.0 | homeobox protein SBH1 isoform X1 | ||||
Refseq | XP_020213002.1 | 0.0 | homeobox protein SBH1 isoform X2 | ||||
Refseq | XP_029126860.1 | 0.0 | homeobox protein SBH1 isoform X2 | ||||
Swissprot | P46608 | 1e-116 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A1S3U9H9 | 0.0 | A0A1S3U9H9_VIGRR; homeobox protein SBH1 isoform X2 | ||||
TrEMBL | V7B6U2 | 0.0 | V7B6U2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007141628.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-105 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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