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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Lj2g3v2877210.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
C3H |
| Protein Properties |
Length: 263aa MW: 28220.8 Da PI: 7.9852 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v2877210.1 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 28.3 | 3.1e-09 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS
zf-CCCH 10 artGtCkyGdrCkFaHgp 27
+rtG Ck+G+ CkF+H++
Lj2g3v2877210.1 1 MRTGSCKFGAACKFHHPQ 18
8***************97 PP
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| 2 | zf-CCCH | 40.8 | 3.7e-13 | 130 | 155 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C++f+ tGtCkyG+ CkF+H++
Lj2g3v2877210.1 130 DQPECKYFMSTGTCKYGSDCKFHHPK 155
689*********************96 PP
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| 3 | zf-CCCH | 35.4 | 1.8e-11 | 172 | 197 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C++++ +G+Ck+G++CkF H+
Lj2g3v2877210.1 172 PGQAICSYYRIYGICKFGPTCKFDHP 197
5789*********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 37 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.1E-7 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 11.282 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.586 | 128 | 156 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-6 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.8E-11 | 130 | 155 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-7 | 132 | 157 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.0E-6 | 134 | 155 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-5 | 169 | 197 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.5E-6 | 171 | 198 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.629 | 171 | 199 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.4E-9 | 173 | 197 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.7E-4 | 176 | 196 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MRTGSCKFGA ACKFHHPQQH ASFGAYSLAG SPTSTIIPAS SLPYVGAFPA WSVPRMSYLS 60
GQGLQSYLPP YLSSSQGIVP AQSWNTYMGS MNPAMPSSFP GSNLVYEYMN PGESLSGGQA 120
LSSTLPDRPD QPECKYFMST GTCKYGSDCK FHHPKERVAQ SLINPLGLPV RPGQAICSYY 180
RIYGICKFGP TCKFDHPVVA IPQNYGMTSP SLSVLDASSL MSNPRGFSST VQLTETSPPK 240
LSSDKLQQNS DAKAEAAAEE DSP
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