PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2794420.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 184aa    MW: 20456.2 Da    PI: 7.0599
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2794420.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.9e-40111101100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear++dPvyG++g i  lq+++ +l+++l
  Lj2g3v2794420.1  11 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLKDPVYGCIGAIAMLQRKMVELQHDL 104
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a +k++
  Lj2g3v2794420.1 105 AIAKDR 110
                      999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.40710111IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-3911108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILVEVP  60
EEQREDTVNS LAYEAEARLK DPVYGCIGAI AMLQRKMVEL QHDLAIAKDR LAHAAATAAA  120
TTTATTTTTT AFSGDILNSH VSLPPFPEFS TCCDFNDNFS HNSSSQSWRT HETVDDFIQI  180
PYIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4661296130LOB family transfactor Ramosa2.1
5ly0_B4e-4661296130LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2794420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7902490.0AY790249.1 Lotus corniculatus var. japonicus lateral organ boundaries-like 1 (LOB1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429806.11e-102PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL82e-63LBD21_ARATH; LOB domain-containing protein 21
TrEMBLQ4VPE91e-125Q4VPE9_LOTJA; Lateral organ boundaries-like 1 (Fragment)
STRINGAES996301e-101(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-64LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]