PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2748860.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 664aa    MW: 72569.7 Da    PI: 7.5122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2748860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07268288526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Lj2g3v2748860.1 268 PCPEFRK-GACQKGDSCEYAHG 288
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.33E-1725163IPR020683Ankyrin repeat-containing domain
CDDcd002043.56E-1327172No hitNo description
SMARTSM0024841002757IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.5E-1731179IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-970140IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.64574183IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.6567498IPR002110Ankyrin repeat
SMARTSM002480.002274104IPR002110Ankyrin repeat
PROSITE profilePS5008810.606109144IPR002110Ankyrin repeat
SMARTSM002480.036109141IPR002110Ankyrin repeat
SMARTSM003562.8E-5263289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338263290IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5268288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4268290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4295327IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.427298322IPR000571Zinc finger, CCCH-type
SMARTSM0035622298321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MCSGSKSKLS SSEQVMESQK ENCDGLHNFS ILLELSASND FEALKREVDE KGLDVNEAGF  60
WYGRRIGSKK MGSEKRTPLM IASLFGSTRV VKYLVETGRV DVNKACGSDK ATALHCAVAG  120
GSELSLEVVK VLLDAGSDAD SLDACGNKPM NLIAPAFNSS SKSRRKAMEL LLRGGESGQL  180
IHQEMDLELI SAPFSSKEGS DKKEYPVDVS LPDINNGLYG SDEFRMYSFK VKPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYPYSCVPCP EFRKGACQKG DSCEYAHGVF ESWLHPAQYR  300
TRLCKDETGC GRKVCFFAHR PEELRPVYAS TGSAMPSPKS YSSNAVDMSV MSPLALSSSS  360
LPMSTVSTPP MSPLAGSLSP KSGNLWQNKI NLNLTPPSLQ LPGSRLKTAL SARDFDLEME  420
MLGLGSPTRQ QQQQQQQQQL IEEIARISSP SFRNRIGDLT PTNLDDLLGS VDSNLLSQLH  480
GLSGPSTPTH LQSQSRHQMM QQNMNHLRSS YPSNIPSSPV RKPSSLGFDS SSAVAAAVMN  540
SRSAAFAKRS QSFIDRGAAG THHLGMSSPS NPSCRVSSGF SDWNSPSGKL DWGVNGDELS  600
KLRKSASFGF RNNGMAPTGS PMAHSEHAEP DVSWVHSLVK DDLSKEMLPP WVEQLYIEQE  660
QMVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.80030.0cell culture| floral bud| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2748860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061200.0AP006120.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT39P22, TM0204, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329404.10.0zinc finger CCCH domain-containing protein 29-like isoform X1
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLV7BA690.0V7BA69_PHAVU; Uncharacterized protein
STRINGXP_007141759.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein