PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 258aa MW: 27792.7 Da PI: 4.8106

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v2536470.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lj2g3v2536470.1 109 FSCNYCQRKFFSSQALGGHQNAH 131 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.19E-6	107	136	No hit	No description
PROSITE profile	PS50157	11.344	109	136	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MKPNIDLEVE AYAEYESDVT SQVASSNVSS IQETSLDPCS DYSLTNSSII TNPSSGDDVS 60 LGLTLNFKNN ELGAGATAAA TDSIGGFSST CESSNEPIAL AAATIPRVFS CNYCQRKFFS 120 SQALGGHQNA HKRERTLAKR AMRMGFFSER YASLASLPLH GSFRSLGIKA HSSLHHGFSP 180 PLAMRPNTPT EVKSNAKFEQ GYPGLPIFLE DDDSDLLWPG SFRQVAVETG DNSHQNFILT 240 GNSGLSFTEV NPPLEVEN

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v2536470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020202552.1	1e-120	zinc finger protein 4
Refseq	XP_020202553.1	1e-120	zinc finger protein 4
Refseq	XP_020202555.1	1e-120	zinc finger protein 4
Refseq	XP_029125059.1	1e-120	zinc finger protein 4
Swissprot	Q39263	6e-45	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A4D6MN01	1e-118	A0A4D6MN01_VIGUN; Uncharacterized protein
STRING	GLYMA14G39280.4	1e-118	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-47	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]