PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2510050.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 412aa    MW: 45728.9 Da    PI: 5.5033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2510050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1361105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT  E+e +++a k++G   W  I +++g ++t+ q++s+ qk+
  Lj2g3v2510050.1  61 RERWTDKEHENFLEALKLYGRA-WPQIEEHVG-TKTAVQIRSHAQKV 105
                      78******************88.*********.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.39E-1455109IPR009057Homeodomain-like
PROSITE profilePS5129417.93156110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-758108IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1559108IPR006447Myb domain, plants
SMARTSM007174.0E-1160108IPR001005SANT/Myb domain
PfamPF002495.1E-1161105IPR001005SANT/Myb domain
CDDcd001675.59E-863106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDIQGRNGAT RSQGGLPFEN GVSLNSGMHL VPCIEKQDDQ ISCGNDNSLK ARKPYTITKQ  60
RERWTDKEHE NFLEALKLYG RAWPQIEEHV GTKTAVQIRS HAQKVFTKIL RETNGNRTTL  120
VASIEIPPPR PKRKPSHPYP RKLVEIPNKE FSITEQPLSD FSQENKSPKS ALAAAVSETH  180
GSSDSDITSS FPLVDPKTSS EEDRSSPLDG VNGGSAYNMQ PLVELEHLSK ENVCSEGEAS  240
EESSGCTFKL FGTTLLVADI CKHSSPTLET IKPIPAMYLM QLQSGCSDIA TIVPWWTLSS  300
KEPEEKYPYP NLTECEDKEV PKEGSWTGSS TSSVHDEENN ERSDDQTRSQ VHNLVGHTTP  360
SETSAAISDL RVRSKTCGKG FVPYKRCVAK RDNQCSAITD EESEEQCIRL FL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.217120.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2510050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028201167.11e-163protein REVEILLE 1-like
TrEMBLQ0PJH71e-161Q0PJH7_SOYBN; MYB transcription factor MYB177
STRINGGLYMA14G39130.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-41MYB_related family protein