PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2437100.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 781aa    MW: 85696.7 Da    PI: 7.2059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2437100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.2e-17322421198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   +++ e++ l+++d +g++W++++++  +++s++yvl+ G     ++ +L +gD+v+F++++  ++
  Lj2g3v2437100.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLQIQDVKGNEWTLQFRFwpNNNSRMYVLE-GVTPCIQSMHLSAGDTVIFSRID-PGG 413
                      99**************************666678889***************9989999999***9.********************887.778 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      + v++++r
  Lj2g3v2437100.1 414 KIVMGFRR 421
                      78888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-28318430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-20320423IPR015300DNA-binding pseudobarrel domain
CDDcd100177.46E-23320421No hitNo description
PROSITE profilePS5086310.56322423IPR003340B3 DNA binding domain
SMARTSM010197.6E-21322423IPR003340B3 DNA binding domain
PfamPF023624.4E-15322421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MGDGACMNQS CKGGGHGREW KKGWPLASGG FARLCNKCGI AYESLIFCEE FHNDESGWRE  60
CNHCKKLVHC GCIASRSMFE FLDYGGIACV NCLKASQLRQ MWDTENSYGS VRSTTNNASD  120
GHAELNGRAM GNKTGEGKLV HLCGISEATE SSGWAQAQRD GILSSIGQNS QEFKFPFREE  180
DTRFSNVLKQ SNHSLTFTTI ENKRPTWESK NMHELLSLTS GNDTFPSATK IVEGRHEGKT  240
TQGPPPLHQG RTSYPILPKP SMTGLTMNLE RNKGMISEAR TPRPPGEWRG KSFLLSRYWP  300
KITDQELEQL SGDLKSTVVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGIPLQ  360
IQDVKGNEWT LQFRFWPNNN SRMYVLEGVT PCIQSMHLSA GDTVIFSRID PGGKIVMGFR  420
RGSKSIDTQD ASTSAHSNGT STKETTLSGV TENLHSGSSN PDLLHSAKGK GEPYPKGHSE  480
HLYLETETAD GIQTGSCEEM VNNDSLQQPI SVLEKKTRNI GPKTKRLHIH SEDAIELRLT  540
WEEAQELLCP PPSVKPNIVT IEDQEFEEYD EPPVFGKRTT FNAFPSGSSH STPEQMSTKE  600
SEDLLRTSKG SKKRKTADKS KSIKERKPSG LGPLSGAAVS GDNSAGPAQA PVGATTKHPR  660
HRPGCVCIVC IQPPSGQARH DPSCPCRACD TVRRRFKTMA RRKKKQRLEP EAGTSQGGKI  720
NYRDDSDTSG TSREDTSHLE NEGGLSRGLL EVAESGAGQL DLNCHPNDHE DMQEDGQQDS  780
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-683004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1692703RRRFKTMARRKK
2700706RRKKKQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.219161e-148cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2437100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027330704.10.0B3 domain-containing transcription repressor VAL1-like isoform X1
TrEMBLA0A1S2XKI90.0A0A1S2XKI9_CICAR; B3 domain-containing protein Os07g0679700-like
STRINGXP_004490716.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2