PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v2364690.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WRKY

Protein Properties

Length: 260aa MW: 29626.8 Da PI: 9.769

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v2364690.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	58.8	1.1e-18	211	252	1	42
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-S CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversa 42 ++DgynW+ Y K+vk se+ +sYY+Ct+++Cpv+k+vers Lj2g3v2364690.1 211 VEDGYNWKQYEEKNVKRSENQKSYYKCTYPNCPVRKRVERSI 252 58**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-15	203	252	IPR003657	WRKY domain
PROSITE profile	PS50811	15.778	206	251	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-15	209	252	IPR003657	WRKY domain
SMART	SM00774	1.6E-13	211	260	IPR003657	WRKY domain
Pfam	PF03106	6.2E-14	212	251	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005794	Cellular Component	Golgi apparatus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MPIPISNLIQ KRLWRLVGFM SSVIGLASYA LSSSFKHLFG EWNFFKITVY AVVSFSISSL 60 MLFLKKWKLS RSFLLKVHSG VLVLLLTSFY SFVSDKDVSG KPDMLSLISC AAFAVMSLCL 120 SKQIDLGFGA DLLNFFLGCL TVQLMKINLM LSIFAAIFCY CLMVLRSKLD SQTQIGTLRM 180 EDHVAVDIDA ADQGQRRGNG HRQIQSLTRR VEDGYNWKQY EEKNVKRSEN QKSYYKCTYP 240 NCPVRKRVER SIVGETMETL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v2364690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027333695.1	1e-128	uncharacterized protein LOC113848406
TrEMBL	A0A1S2XKG0	1e-126	A0A1S2XKG0_CICAR; uncharacterized protein LOC101503578 isoform X1
STRING	XP_004490676.1	1e-127	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14743	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	3e-18	WRKY DNA-binding protein 33