![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj2g3v2221850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 428aa MW: 46725 Da PI: 4.7867 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.1 | 1.2e-05 | 5 | 42 | 6 | 37 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e++ + +C+++ +lC +C + H+ H Lj2g3v2221850.1 5 CDFCGEQRSSVYCRSDVACLCLSCDRNVHSAnalskrH 42 ***************************99545555555 PP | |||||||
2 | zf-B_box | 24.1 | 7.3e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++++++ C d ++ lC++C +H g H++++ Lj2g3v2221850.1 47 VCERCNSQPAYVRCADEKVSLCQNCDWLSH-GaapssstHKRQS 89 8*************************999*.5588888998876 PP | |||||||
3 | CCT | 61.3 | 3.1e-21 | 371 | 414 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k+RkF+K++rY++RKa+A+ R+RvKGrFvk+ Lj2g3v2221850.1 371 RSNAVMRYKEKKKNRKFDKRVRYATRKARADVRKRVKGRFVKAG 414 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.3 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.84E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 4.2E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.158 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-5 | 46 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.61E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.15 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.398 | 371 | 413 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.8E-16 | 371 | 413 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 428 aa Download sequence Send to blast |
MGYLCDFCGE QRSSVYCRSD VACLCLSCDR NVHSANALSK RHARTLVCER CNSQPAYVRC 60 ADEKVSLCQN CDWLSHGAAP SSSTHKRQSI NCYSGCPSAA ELSSMWSFFS DIPSIGEACE 120 KELGLMSINE NTDKSAWVPP ESENVSGAAQ VTDLPNKDKS WAGTSSAPES SSEPRVLEQA 180 PGPANECMPK LHCPAKKTSE LCEDDTVCDD FNIDEMDLFL KDEMDLFSKD EMDLELENYE 240 ELFGMALCHS EELFENGGIG SLFEAKDISA SAGDSNCQGA LTAEGSSVAL GNATKPACST 300 APSADSMLST KTEPIISFAA RQSQSNISFS GAAKDSSTAD YQDCGASSML PMGEPPWCPP 360 FPESSLHSAN RSNAVMRYKE KKKNRKFDKR VRYATRKARA DVRKRVKGRF VKAGDVYDYD 420 PLSETRSY |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.15584 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj2g3v2221850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027940006.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940007.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940008.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940009.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_027940010.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9LUA9 | 1e-139 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A4D6MM65 | 0.0 | A0A4D6MM65_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | GLYMA02G38870.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-115 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|