PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2113110.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 189aa    MW: 20723 Da    PI: 6.6872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2113110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-181665255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr +k +g+Wv+eIr+p   g ++r++lg+f t+e+Aa+a++ a++ ++g
  Lj2g3v2113110.1 16 AYRGVRKRK-WGKWVSEIREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 65
                     69****999.**********8...325***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-231575No hitNo description
SuperFamilySSF541711.37E-221574IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-321674IPR001471AP2/ERF domain
PfamPF008477.5E-121665IPR001471AP2/ERF domain
SMARTSM003802.4E-371679IPR001471AP2/ERF domain
PROSITE profilePS5103223.6831673IPR001471AP2/ERF domain
PRINTSPR003673.9E-101728IPR001471AP2/ERF domain
PRINTSPR003673.9E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPSNSSHHGT GPATSAYRGV RKRKWGKWVS EIREPGTKTR IWLGSFETPE MAAAAYDVAA  60
LHFRGREARL NFPELATALP RPASNNADHI RMAAHEAALR LRSNTLTAPE TGGGSAGSGS  120
GAPLTVRLSS TQIQAINDSP LDSPPTWMQM SQYNPFMLDD QSMMFANNAG YGFEENEWEN  180
KQSDSLWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-161773663ATERF1
3gcc_A9e-161773663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2113110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619244.13e-94ethylene-responsive transcription factor ERF021
RefseqXP_028189671.13e-94ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-66ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A445HVK28e-93A0A445HVK2_GLYSO; Ethylene-responsive transcription factor ERF021
STRINGGLYMA11G01640.11e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-67ERF family protein