PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v2002350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 41113.6 Da PI: 6.7579 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.8 | 3.6e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv++yL+kkv++k++el +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+ Lj2g3v2002350.1 7 VPPGFRFHPTDEELVDHYLRKKVASKRIEL-DVIKDVDLYKIEPWDLQElcKLGTdEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKS 99 69****************************.9***************954544443556*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ k+ lvg++ktLvfykgrap+g+k+dW+mheyrle Lj2g3v2002350.1 100 IYT-KHCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ***.899*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-61 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.567 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-29 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MNTFSHVPPG FRFHPTDEEL VDHYLRKKVA SKRIELDVIK DVDLYKIEPW DLQELCKLGT 60 DEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKSI YTKHCLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GSTPQEEGWA VCKVFKKRMP TTIRKMGDYG SPCWYDDQVS 180 FMQELESPNQ VSSHHYASYQ QQQHYPCKQE LEMQYNVTRT HDAFLQLPQL ESPKLLQSYG 240 YDHGNNNNGS ILQSSSSSLP QQEEHIQHGQ HQSLQHLLYG SNNDQVTDWR VLDKFVASQL 300 SHEQHASKDE TSYSNVAEDQ EQFTLLPNGS EKPEINQKYA STTTSSCQID PWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 6 | 158 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v2002350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027361849.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-144 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A061GBJ7 | 0.0 | A0A061GBJ7_THECC; NAC domain protein, IPR003441 isoform 1 | ||||
TrEMBL | A0A251LEQ3 | 0.0 | A0A251LEQ3_MANES; Uncharacterized protein | ||||
STRING | EOY24430 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-139 | NAC 007 |
Publications ? help Back to Top | |||
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