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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj2g3v2002350.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
NAC |
| Protein Properties |
Length: 353aa MW: 41113.6 Da PI: 6.7579 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v2002350.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 180.8 | 3.6e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+ppGfrFhPtdeelv++yL+kkv++k++el +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+
Lj2g3v2002350.1 7 VPPGFRFHPTDEELVDHYLRKKVASKRIEL-DVIKDVDLYKIEPWDLQElcKLGTdEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKS 99
69****************************.9***************954544443556*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+++ k+ lvg++ktLvfykgrap+g+k+dW+mheyrle
Lj2g3v2002350.1 100 IYT-KHCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
***.899*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MNTFSHVPPG FRFHPTDEEL VDHYLRKKVA SKRIELDVIK DVDLYKIEPW DLQELCKLGT 60
DEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKSI YTKHCLVGMR KTLVFYKGRA 120
PNGQKSDWIM HEYRLETNEN GSTPQEEGWA VCKVFKKRMP TTIRKMGDYG SPCWYDDQVS 180
FMQELESPNQ VSSHHYASYQ QQQHYPCKQE LEMQYNVTRT HDAFLQLPQL ESPKLLQSYG 240
YDHGNNNNGS ILQSSSSSLP QQEEHIQHGQ HQSLQHLLYG SNNDQVTDWR VLDKFVASQL 300
SHEQHASKDE TSYSNVAEDQ EQFTLLPNGS EKPEINQKYA STTTSSCQID PWK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
