PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1989250.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 33856.9 Da    PI: 7.1293
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1989250.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18140194256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Lj2g3v1989250.1 140 RKKLRLSKDQAIVLEESFKEHNTLNPKQKMALAKQLGLRARQVEVWFQNRRARTK 194
                      788899***********************************************98 PP
2HD-ZIP_I/II125.81.9e-40140229191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+ +LEesF+e+++L+p++K++la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Lj2g3v1989250.1 140 RKKLRLSKDQAIVLEESFKEHNTLNPKQKMALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 229
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.7E-274111IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.6E-18125194IPR009057Homeodomain-like
SuperFamilySSF466893.51E-18131197IPR009057Homeodomain-like
PROSITE profilePS5007117.297136196IPR001356Homeobox domain
SMARTSM003896.2E-15138200IPR001356Homeobox domain
CDDcd000868.83E-15140197No hitNo description
PfamPF000464.7E-16140194IPR001356Homeobox domain
PRINTSPR000311.9E-5167176IPR000047Helix-turn-helix motif
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5176192IPR000047Helix-turn-helix motif
CDDcd146860.0067189228No hitNo description
PfamPF021832.3E-11196230IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-27196239IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTLGKEDDLG LSLSLSLSFP QKNPPNPNPL HLNLMSSSSA YNPLKPTWTQ PFTSSDRDSE  60
TCRVGEGGFS LGGIGIDVNR LPSGVDCEEE AGVSSPNSTV SSVSGKRSER EGNGEERDVE  120
ERDCSRGISD EDDDGGETSR KKLRLSKDQA IVLEESFKEH NTLNPKQKMA LAKQLGLRAR  180
QVEVWFQNRR ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVQELRALK LSPQFYMQMT  240
PPTTLTMCPS CERVAVPPSA VDPSTRHHHP MSAPNNHARP FSVGAWASTA PISHRPFDVL  300
RPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144SRKKLRL
2188196RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.96050.0cell culture| pod| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1989250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611347.11e-159homeobox-leucine zipper protein HAT4
SwissprotP466011e-108HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLB7FJ621e-157B7FJ62_MEDTR; Homeobox associated leucine zipper protein
STRINGAES943051e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.14e-95homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]