 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lj2g3v1985040.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
NAC |
| Protein Properties |
Length: 322aa MW: 36288.2 Da PI: 4.9663 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v1985040.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.5 | 8e-51 | 4 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeel+ +yL++kveg ++el evi+e+d yk++Pw+Lp k + ++ +w+fF++rd+ky++g+r+nratk+gyWkatgkd++v
Lj2g3v1985040.1 4 LPPGFRFHPTDEELLGYYLNRKVEGLEIEL-EVIPEIDFYKFDPWELPdKsFLPRRDLDWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKV 96
79****************************.99**************95433444666************************************ PP
NAM 93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +++g +ktLvfy+grap g +tdWvmheyrl
Lj2g3v1985040.1 97 VCHpspftsPVTVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 138
**877776555569**************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MGGLPPGFRF HPTDEELLGY YLNRKVEGLE IELEVIPEID FYKFDPWELP DKSFLPRRDL 60
DWFFFCPRDR KYPNGSRTNR ATKAGYWKAT GKDRKVVCHP SPFTSPVTVT GYRKTLVFYR 120
GRAPLGDRTD WVMHEYRLCD DPGQGPQGAF ALCRVMKKNE KANEKGKGRA GNNGSTTNGN 180
DTSMRFSNSG DISSLSSPID SPSHMAPVSG FEQASTDTNS SSFWLSPDMI LDSSKEYSQT 240
QDVVGYFSQH DLMNTTTPCQ SFGHAEISPS SSYSNFNGET EFSDALMSPY SGQGIFMDLC 300
VNEDMAYEYY DQINSISDPK QF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-49 | 4 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-49 | 4 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-49 | 4 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-49 | 4 | 164 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-49 | 4 | 164 | 17 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-49 | 4 | 164 | 17 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010279 | 1e-162 | AP010279.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT17M11, TM1845a, complete sequence. |
