PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1984620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 40746.8 Da PI: 5.89 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 6.8e-11 | 187 | 232 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++ErrRR+++ +++ L l+P + kK++Ka++L A++Y+k L Lj2g3v1984620.1 187 DHIIAERRRREKLSQSLIALAALIPGL-----KKMDKASVLGDAIKYVKVL 232 6999***********************.....9***************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.811 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-15 | 187 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 187 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-11 | 188 | 237 | No hit | No description |
SMART | SM00353 | 8.0E-12 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEKLNTPTEA SSSCWLSDLL LQEMDDCNFF QQCNPNLLGD EEFLSHDIVS AFQSDNLQQQ 60 QQPLSSESYS SYPVSNSETV WNSSTDETCF ERPAKQQKTK HVLPDQSNSS SPSSPTSQIL 120 SFENTHLYGL DCSLNPNLQN EGVSVSTPQL RNVNFPAQNR KGSTQNQNFE TITNPQGKGS 180 KKSHGQDHII AERRRREKLS QSLIALAALI PGLKKMDKAS VLGDAIKYVK VLKERLRLLE 240 EQNKNRAMES VVVVNKPQIS NDDNSSSSCD DGTIIGSEEA LPHVEARVSE KDVLLRLHCK 300 KQKGLLLKIL FEIQNLHLFV VNSSVLPFGD SILDITIVAQ MGAEYNLTIN ELVKNLRVAA 360 LRSMSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 196 | ERRRRE |
2 | 192 | 197 | RRRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.6233 | 0.0 | floral bud| flower| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1984620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010277 | 0.0 | AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence. | |||
GenBank | FJ379757 | 0.0 | FJ379757.1 Lotus japonicus putative basic helix-loop-helix protein BHLH17 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028245048.1 | 1e-125 | transcription factor bHLH18-like isoform X1 | ||||
TrEMBL | C0JP22 | 0.0 | C0JP22_LOTJA; Putative basic helix-loop-helix protein BHLH17 | ||||
STRING | GLYMA01G40620.2 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11069 | 12 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-46 | bHLH family protein |