PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1984550.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 345aa    MW: 38688.2 Da    PI: 6.1427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1984550.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12165212355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR++i + f  L  l+P +     kK++Ka++L  A++++k+Lq
  Lj2g3v1984550.2 165 QDHIIAERKRREKISQQFIALSALIPGL-----KKMDKASVLGDAIQHVKQLQ 212
                      6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16166224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.39E-11167216No hitNo description
SMARTSM003535.2E-14168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMSPEGESWT SWLCDLEPED CNFLNESDTN WAGEISFPSE AQEQNLQRSF TIDSNHSHST  60
TTSTFKTEHC SSTMSNSSSG EDDNTTSERP SKTLKMSNAS PSYILSFSNE NPAHILNFDS  120
TLKPKSKALT VNVNHHGNRS LESQKKETKR KVQEGEKARS PHQAQDHIIA ERKRREKISQ  180
QFIALSALIP GLKKMDKASV LGDAIQHVKQ LQEQVKLLEE QSQRKSSESV VYVEKSKSSV  240
VDDDVSLSDT SSNSDNSNNF SLPEVEARVS ENKVLIRIHC EKQEGVLMNI LKEIHNLNLS  300
VINCSTLLFG TSKLDITIIA EMDDGFRLSV KELARKLRVG LLQFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERKRRE
2171176RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1984550.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102770.0AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361592.11e-125transcription factor bHLH18-like
TrEMBLA0A2Z6PHU81e-114A0A2Z6PHU8_TRISU; Uncharacterized protein
TrEMBLG7K1311e-114G7K131_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES944571e-115(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-38bHLH family protein