PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1984550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 345aa MW: 38688.2 Da PI: 6.1427 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.5e-12 | 165 | 212 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR++i + f L l+P + kK++Ka++L A++++k+Lq Lj2g3v1984550.1 165 QDHIIAERKRREKISQQFIALSALIPGL-----KKMDKASVLGDAIQHVKQLQ 212 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.186 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 165 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-16 | 166 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 166 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.39E-11 | 167 | 216 | No hit | No description |
SMART | SM00353 | 5.2E-14 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MMSPEGESWT SWLCDLEPED CNFLNESDTN WAGEISFPSE AQEQNLQRSF TIDSNHSHST 60 TTSTFKTEHC SSTMSNSSSG EDDNTTSERP SKTLKMSNAS PSYILSFSNE NPAHILNFDS 120 TLKPKSKALT VNVNHHGNRS LESQKKETKR KVQEGEKARS PHQAQDHIIA ERKRREKISQ 180 QFIALSALIP GLKKMDKASV LGDAIQHVKQ LQEQVKLLEE QSQRKSSESV VYVEKSKSSV 240 VDDDVSLSDT SSNSDNSNNF SLPEVEARVS ENKVLIRIHC EKQEGVLMNI LKEIHNLNLS 300 VINCSTLLFG TSKLDITIIA EMDDGFRLSV KELARKLRVG LLQFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | ERKRRE |
2 | 171 | 176 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1984550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010277 | 0.0 | AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027361592.1 | 1e-125 | transcription factor bHLH18-like | ||||
TrEMBL | A0A2Z6PHU8 | 1e-114 | A0A2Z6PHU8_TRISU; Uncharacterized protein | ||||
TrEMBL | G7K131 | 1e-114 | G7K131_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein | ||||
STRING | AES94457 | 1e-115 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-38 | bHLH family protein |