PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB

Protein Properties

Length: 325aa MW: 36373.9 Da PI: 7.9847

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1983980.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ ++ +G+g +W + ++++g++R++k+c++rw++yl Lj2g3v1983980.1 14 RGPWSPEEDAKLKAYIDHHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	38.3	3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Lj2g3v1983980.1 69 GGFSEEEDNIICNLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.759	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.47E-26	11	109	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	4.88E-9	16	62	No hit	No description
PROSITE profile	PS51294	21.758	63	117	IPR017930	Myb domain
SMART	SM00717	4.4E-11	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-11	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	70	117	IPR009057	Homeodomain-like
CDD	cd00167	2.24E-8	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKAYID HHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC NLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQAQAR RVSTMKQEIK RETDQNLMVA SGVNTTHAAF YWPAEYSIPM PVANASIQDY 180 DFHNQTSLKS LLINKQGGVR FSYDHQQPYS NAITATANSQ DPCDIYPAST MNMINPVAMV 240 SNANIGGTTC QQSNVFQGFE NFTSDFSELV CVNPQTIDGF YGMESLEMSN VSSTNTPSAE 300 STSWGDMSSL VYSPLVSDYF GMQMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-24	14	117	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269\|PubMed:16461581}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:16461581}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00089	SELEX	Transfer from AT3G49690	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1983980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010276	0.0	AP010276.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT09A07a, TM5181, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014619314.1	1e-151	transcription factor RAX3
Refseq	XP_028188638.1	1e-151	transcription factor RAX3-like
Swissprot	Q9M2Y9	3e-90	RAX3_ARATH; Transcription factor RAX3
TrEMBL	A0A151QVQ0	1e-159	A0A151QVQ0_CAJCA; Transcription factor RAX3
STRING	GLYMA11G04880.2	1e-150	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-82	myb domain protein 84

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]