PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1968560.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 309aa    MW: 33556.5 Da    PI: 10.3277
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1968560.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.9e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Lj2g3v1968560.3  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEysavlRMRSNVDLKDKWRN 55
                     79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.622161IPR017930Myb domain
SuperFamilySSF466897.1E-15270IPR009057Homeodomain-like
SMARTSM007173.2E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12556IPR009057Homeodomain-like
PfamPF002493.2E-7555IPR001005SANT/Myb domain
CDDcd116607.59E-17657No hitNo description
SMARTSM005262.5E-13102177IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-17113191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.028114182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.1E-16116184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.4E-11119175IPR005818Linker histone H1/H5, domain H15
CDDcd000733.73E-10120184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEYSAV LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL AKNLPAPKLV NNHTALSTIV QHEDDANTKP LAVSGGTTPN SKEQISRLNN  120
LILDSIIRLK EPKGSDRAAI AAYIEDQYWS PSNLRTLLST KLKHMVASGK LIKIKHKYRI  180
ATNSTISEKQ RCSSLLLLDG RPKDSPKAEK SNNILSKSQI DAEISKARGV VAAQEAAPAA  240
AKAVAEAEAA IAEAEAAARE AEAAEAEAEQ ARVFAKALTK ALKCRTLHIC SIPSPSFPNA  300
PIQLFQNYS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00597DAPTransfer from AT5G67580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1968560.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360708.11e-149telomere repeat-binding factor 2-like
RefseqXP_027360709.11e-149telomere repeat-binding factor 2-like
RefseqXP_027360710.11e-149telomere repeat-binding factor 2-like
RefseqXP_027360711.11e-149telomere repeat-binding factor 2-like
SwissprotQ9FJW52e-68TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLV7CHF91e-134V7CHF9_PHAVU; Uncharacterized protein
STRINGXP_007156706.11e-134(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.22e-62MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]