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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lj2g3v1965110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
LBD |
| Protein Properties |
Length: 237aa MW: 25847.3 Da PI: 8.0955 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v1965110.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 96.5 | 2.9e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
+C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++++p+ +r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q
Lj2g3v1965110.1 2 SCNGCRVLRKGCSESCILRPCLqwidtAEAQGHATVFVAKFFGRADLMSFISNVPQPQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95
6*********************9999777889************************************************************** PP
DUF260 90 lkaelall 97
+++e++l+
Lj2g3v1965110.1 96 AAVETVLR 103
**998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDTAE AQGHATVFVA KFFGRADLMS FISNVPQPQR 60
PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPL PELLGLDAPS 120
HVPTAADDAS EGEVTYDTWR IRDPNPNARL TNSRSSAGKR QRPEELAKLQ TTTDLNLRLT 180
PGFLQNVSSY GCKREARRPG SPSMNSEESV TTTACLGSGI GDHCSRDEDR KVLKLFV
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP006432 | 2e-52 | AP006432.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT14C18, TM0330, complete sequence. |
