PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1902070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 116aa MW: 13312.2 Da PI: 10.3346 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 38 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Lj2g3v1902070.1 38 RENWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 82 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.109 | 33 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-17 | 33 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-19 | 36 | 85 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.8E-10 | 37 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 38 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-11 | 38 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.33E-8 | 40 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MVSENPNASE AIYLEPLADS VEDPAKKTRK PFTITKSREN WTEPEHDKFL EALQLFDRDW 60 KKIEAFVGSK TVIQIRSHAQ KYFLKAQKSG KSEHLPPPRP KRKAAHPYPQ KASKNG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.6524 | 5e-71 | floral bud| flower| pod| protoplast| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1902070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009788 | 1e-83 | AP009788.1 Lotus japonicus genomic DNA, clone: LjT02J13, TM2022, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126456.1 | 1e-68 | protein REVEILLE 6 isoform X4 | ||||
Swissprot | Q8H0W3 | 2e-56 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A151U6K4 | 5e-67 | A0A151U6K4_CAJCA; Myb-like protein G | ||||
STRING | GLYMA20G30250.1 | 3e-64 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 9e-45 | MYB_related family protein |
Publications ? help Back to Top | |||
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