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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1757070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 338aa MW: 37190.6 Da PI: 9.0603 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.5 | 5.8e-32 | 130 | 184 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eCl+NhAas+G+h+vDGCgEfmps gee ++alkCaAC+CHRnFHR+eve e Lj2g3v1757070.1 130 VRYRECLRNHAASMGSHVVDGCGEFMPS-GEE-GTEALKCAACECHRNFHRKEVEGE 184 89*************************9.666.4789****************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.7E-29 | 130 | 181 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-19 | 130 | 184 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.3E-28 | 131 | 181 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.012 | 132 | 180 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.45E-18 | 263 | 334 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 263 | 334 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.2E-27 | 273 | 330 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEAVRGQGSK DIEIMSTATT TTLGYNLPIR NSSSSSSKLS SPTAGHRTST DQPAPVPVPH 60 TNNNTLIFND SAQPSHHHHH LSAPPLPQTQ NHHHQSQRPT TTDPDLTPSS SPLATTRITA 120 PPPPPPTPLV RYRECLRNHA ASMGSHVVDG CGEFMPSGEE GTEALKCAAC ECHRNFHRKE 180 VEGEQQVPNP SFHSYYKHSN GHLQLPAPQP LPPPQNSSLR FSHAAAGTTP TAGPVPVPPL 240 MMAFGGAAAE SSSEDLNMFQ RNAGAQEAAA LSRKRHRTKF SSQQKDRMME FAEKIGWRIQ 300 KQDEEEVQQF CSQVGVRRKV FKVWMHNNKQ AMKKLHQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-22 | 273 | 329 | 17 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.22337 | 0.0 | protoplast |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1757070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007301 | 0.0 | AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027360509.1 | 1e-102 | zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A4P1QTJ0 | 7e-99 | A0A4P1QTJ0_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA11G07360.1 | 4e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 6e-50 | homeobox protein 24 |