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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1745000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 242aa MW: 25982.7 Da PI: 8.201 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.2 | 3.4e-32 | 116 | 170 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eCl+NhAas+G+h+vDGCgEfmps gee ++alkCaAC+CHRnFHR+eve e Lj2g3v1745000.1 116 VRYRECLRNHAASMGSHVVDGCGEFMPS-GEE-GTEALKCAACECHRNFHRKEVEGE 170 89*************************9.666.4789****************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-19 | 116 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.2E-29 | 116 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.3E-28 | 117 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.012 | 118 | 166 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSTATTTTLG YNLPIRNSSS SSSKLSSPTA GHRTSTDQPA PVPVPHTNNN TLIFNDSAQP 60 SHHHHHLSAP PLPQTQNPHH QSQSPTTTDP DLTPSSSPLA TTRITAPPPP PPTPLVRYRE 120 CLRNHAASMG SHVVDGCGEF MPSGEEGTEA LKCAACECHR NFHRKEVEGE QQVPNPSFHS 180 YYKHSNGHLQ LPAPQPLPPP QNSSLRFSHA AAGTTPTAGG GADGFRRRCR GVVERRSEHV 240 PA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.22337 | 0.0 | protoplast |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1745000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007301 | 0.0 | AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019421333.1 | 2e-48 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_019421336.1 | 2e-48 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_019421337.1 | 2e-48 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_019421338.1 | 2e-48 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A4P1QTJ0 | 4e-47 | A0A4P1QTJ0_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA11G07360.1 | 2e-45 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 8e-27 | homeobox protein 33 |